SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '5upb'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2CL5_A_SAMA1217_0
(CATECHOL
O-METHYLTRANSFERASE)		 5upb ACETOACETATE
DECARBOXYLASE
(Sphingomonas
wittichii) 		5 / 12 GLY A 183
TYR A  99
ASN A 118
SER A 198
HIS A 184
 None
 1.41A 2cl5A-5upbA:
undetectable		 2cl5A-5upbA:
19.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ZTH_A_SAMA305_0
(CATECHOL
O-METHYLTRANSFERASE)		 5upb ACETOACETATE
DECARBOXYLASE
(Sphingomonas
wittichii) 		5 / 12 GLY A 183
TYR A  99
ASN A 118
SER A 198
HIS A 184
 None
 1.31A 2zthA-5upbA:
undetectable		 2zthA-5upbA:
19.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3A65_A_ACAA601_1
(6-AMINOHEXANOATE-DIM
ER HYDROLASE)		 5upb ACETOACETATE
DECARBOXYLASE
(Sphingomonas
wittichii) 		5 / 12 ALA A  26
TYR A  82
VAL A 106
ASP A 107
GLY A  25
 None
 1.00A 3a65A-5upbA:
undetectable		 3a65A-5upbA:
20.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3TJ7_C_ACTC610_0
(GBAA_1210 PROTEIN)		 5upb ACETOACETATE
DECARBOXYLASE
(Sphingomonas
wittichii) 		3 / 3 ASN A 204
ALA A 180
ARG A  96
 None
 0.75A 3tj7C-5upbA:
2.0
3tj7D-5upbA:
2.0		 3tj7C-5upbA:
17.56
3tj7D-5upbA:
17.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4DF2_A_4CHA506_0
(NADPH DEHYDROGENASE)		 5upb ACETOACETATE
DECARBOXYLASE
(Sphingomonas
wittichii) 		4 / 6 THR A  30
TYR A  32
TYR A  99
TYR A 244
 None
 1.40A 4df2A-5upbA:
undetectable		 4df2A-5upbA:
23.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4XP1_A_LDPA708_1
(DOPAMINE
TRANSPORTER, ISOFORM
B)		 5upb ACETOACETATE
DECARBOXYLASE
(Sphingomonas
wittichii) 		5 / 10 ALA A  61
ASP A  27
TYR A 244
PHE A  62
SER A 245
 None
 1.36A 4xp1A-5upbA:
undetectable		 4xp1A-5upbA:
20.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6GIQ_T_PCFT101_0
(CYTOCHROME B-C1
COMPLEX SUBUNIT 1,
MITOCHONDRIAL
CYTOCHROME B-C1
COMPLEX SUBUNIT 9
CYTOCHROME B-C1
COMPLEX SUBUNIT
RIESKE,
MITOCHONDRIAL)		 5upb ACETOACETATE
DECARBOXYLASE
(Sphingomonas
wittichii) 		4 / 8 ASP A  18
TYR A  22
GLY A  25
VAL A  81
 None
 1.11A 6giqL-5upbA:
undetectable
6giqP-5upbA:
undetectable
6giqT-5upbA:
undetectable		 6giqL-5upbA:
20.18
6giqP-5upbA:
23.64
6giqT-5upbA:
15.42