SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '5w6l'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1TYR_B_9CRB130_1
(TRANSTHYRETIN)
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus)
4 / 7 ALA A3956
LEU A3954
SER A3951
VAL A3798
ALA  A3956 ( 0.0A)
LEU  A3954 ( 0.6A)
SER  A3951 ( 0.0A)
VAL  A3798 ( 0.6A)
0.99A 1tyrB-5w6lA:
undetectable
1tyrB-5w6lA:
19.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1UPF_C_URFC999_1
(URACIL
PHOSPHORIBOSYLTRANSF
ERASE)
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus)
4 / 5 MET A3999
ALA A4004
ILE A3848
ASP A3721
TYR  A4000 ( 3.4A)
ALA  A4004 ( 0.0A)
ILE  A3848 ( 0.7A)
ASP  A3721 ( 0.6A)
1.15A 1upfC-5w6lA:
undetectable
1upfC-5w6lA:
15.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2AZQ_A_PCFA954_0
(CATECHOL
1,2-DIOXYGENASE)
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus)
5 / 9 LEU A4016
ALA A4024
TYR A4026
LEU A3897
GLU A3930
LEU  A4016 ( 0.6A)
ALA  A4024 ( 0.0A)
TYR  A4026 ( 1.3A)
LEU  A3897 ( 0.6A)
GLU  A3930 ( 0.6A)
1.30A 2azqA-5w6lA:
undetectable
2azqA-5w6lA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2BXE_B_1FLB2003_1
(SERUM ALBUMIN)
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus)
5 / 10 LEU A3598
LEU A3620
HIS A3624
LEU A3638
ILE A3642
LEU  A3598 ( 0.6A)
LEU  A3620 ( 0.6A)
HIS  A3624 ( 1.0A)
LEU  A3638 ( 0.6A)
ILE  A3642 ( 0.7A)
1.08A 2bxeB-5w6lA:
3.7
2bxeB-5w6lA:
9.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2BXP_A_P1ZA3001_1
(SERUM ALBUMIN)
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus)
5 / 12 LEU A3598
LEU A3620
HIS A3624
LEU A3638
ILE A3642
LEU  A3598 ( 0.6A)
LEU  A3620 ( 0.6A)
HIS  A3624 ( 1.0A)
LEU  A3638 ( 0.6A)
ILE  A3642 ( 0.7A)
1.05A 2bxpA-5w6lA:
undetectable
2bxpA-5w6lA:
9.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2BXQ_A_P1ZA2002_1
(SERUM ALBUMIN)
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus)
5 / 12 LEU A3598
LEU A3620
HIS A3624
LEU A3638
ILE A3642
LEU  A3598 ( 0.6A)
LEU  A3620 ( 0.6A)
HIS  A3624 ( 1.0A)
LEU  A3638 ( 0.6A)
ILE  A3642 ( 0.7A)
1.01A 2bxqA-5w6lA:
3.4
2bxqA-5w6lA:
9.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3AVO_A_PAUA314_0
(PANTOTHENATE KINASE)
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus)
5 / 11 VAL A3665
LEU A3598
HIS A3624
ILE A3642
ASN A3639
VAL  A3665 ( 0.6A)
LEU  A3598 ( 0.6A)
HIS  A3624 ( 1.0A)
ILE  A3642 ( 0.7A)
ASN  A3639 ( 0.6A)
1.31A 3avoA-5w6lA:
undetectable
3avoA-5w6lA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3EEY_I_SAMI300_0
(PUTATIVE RRNA
METHYLASE)
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus)
5 / 12 GLY A3895
ASP A4049
ILE A3898
GLY A3899
LEU A3890
GLY  A3895 ( 0.0A)
ASP  A4049 ( 0.6A)
ILE  A3898 ( 0.7A)
GLY  A3899 ( 0.0A)
LEU  A3890 ( 0.6A)
1.14A 3eeyI-5w6lA:
undetectable
3eeyI-5w6lA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3EEY_J_SAMJ300_0
(PUTATIVE RRNA
METHYLASE)
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus)
5 / 12 GLY A3895
ASP A4049
ILE A3898
GLY A3899
LEU A3890
GLY  A3895 ( 0.0A)
ASP  A4049 ( 0.6A)
ILE  A3898 ( 0.7A)
GLY  A3899 ( 0.0A)
LEU  A3890 ( 0.6A)
1.12A 3eeyJ-5w6lA:
undetectable
3eeyJ-5w6lA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3K37_B_BCZB468_1
(NEURAMINIDASE)
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus)
3 / 3 ARG A3933
GLU A3821
TYR A3833
ARG  A3933 ( 0.6A)
GLU  A3821 ( 0.6A)
TYR  A3833 ( 1.3A)
0.94A 3k37B-5w6lA:
undetectable
3k37B-5w6lA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3LM8_A_VIBA223_1
(THIAMINE
PYROPHOSPHOKINASE)
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus)
4 / 7 LEU A3825
LEU A3837
SER A3832
ASP A3838
LEU  A3825 ( 0.6A)
LEU  A3837 ( 0.5A)
SER  A3832 ( 0.0A)
ASP  A3838 ( 0.6A)
1.02A 3lm8A-5w6lA:
undetectable
3lm8C-5w6lA:
undetectable
3lm8A-5w6lA:
21.31
3lm8C-5w6lA:
21.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3LM8_D_VIBD223_1
(THIAMINE
PYROPHOSPHOKINASE)
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus)
4 / 8 ASP A3838
LEU A3825
LEU A3837
SER A3832
ASP  A3838 ( 0.6A)
LEU  A3825 ( 0.6A)
LEU  A3837 ( 0.5A)
SER  A3832 ( 0.0A)
0.93A 3lm8B-5w6lA:
undetectable
3lm8D-5w6lA:
undetectable
3lm8B-5w6lA:
21.31
3lm8D-5w6lA:
21.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3SUD_D_SUED1201_2
(NS3 PROTEASE, NS4A
PROTEIN)
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus)
4 / 5 TYR A3786
LEU A3958
LYS A3959
ARG A3933
TYR  A3786 ( 1.3A)
LEU  A3958 ( 0.6A)
LYS  A3959 ( 0.0A)
ARG  A3933 ( 0.6A)
1.36A 3sudD-5w6lA:
undetectable
3sudD-5w6lA:
19.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3U40_E_ADNE251_1
(PURINE NUCLEOSIDE
PHOSPHORYLASE)
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus)
5 / 12 ARG A4001
GLY A3903
VAL A3901
GLU A3900
GLU A3930
ARG  A4001 ( 0.6A)
GLY  A3903 ( 0.0A)
VAL  A3901 ( 0.6A)
GLU  A3900 ( 0.6A)
GLU  A3930 ( 0.6A)
1.46A 3u40D-5w6lA:
undetectable
3u40E-5w6lA:
undetectable
3u40D-5w6lA:
17.41
3u40E-5w6lA:
17.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3W9T_F_W9TF503_1
(HEMOLYTIC LECTIN
CEL-III)
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus)
4 / 6 GLU A3846
GLY A3847
LEU A3710
GLU A3854
GLU  A3846 ( 0.6A)
GLY  A3847 ( 0.0A)
LEU  A3710 ( 0.6A)
GLU  A3854 ( 0.6A)
1.16A 3w9tF-5w6lA:
undetectable
3w9tF-5w6lA:
12.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4KYK_B_IMNB300_1
(LACTOYLGLUTATHIONE
LYASE)
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus)
5 / 12 ALA A4009
LEU A3932
PHE A3968
GLY A3899
LEU A3909
ALA  A4009 ( 0.0A)
LEU  A3932 ( 0.6A)
PHE  A3968 ( 1.3A)
GLY  A3899 ( 0.0A)
LEU  A3909 ( 0.6A)
1.12A 4kykA-5w6lA:
undetectable
4kykB-5w6lA:
undetectable
4kykA-5w6lA:
19.13
4kykB-5w6lA:
19.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4WG0_H_CHDH103_0
(NUCLEAR RECEPTOR
COACTIVATOR 2)
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus)
5 / 11 LEU A4048
LEU A3897
GLU A4011
LEU A4013
ALA A4005
LEU  A4048 ( 0.6A)
LEU  A3897 ( 0.6A)
GLU  A4011 ( 0.6A)
LEU  A4013 ( 0.5A)
ALA  A4005 ( 0.0A)
1.17A 4wg0H-5w6lA:
undetectable
4wg0I-5w6lA:
undetectable
4wg0J-5w6lA:
undetectable
4wg0H-5w6lA:
undetectable
4wg0I-5w6lA:
undetectable
4wg0J-5w6lA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5A5Z_C_WJZC304_0
(BETA-LACTAMASE NDM-1)
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus)
4 / 7 MET A3674
GLY A3705
ASN A3704
HIS A3707
ALA  A3699 ( 3.5A)
GLY  A3705 ( 0.0A)
ASN  A3704 ( 0.6A)
HIS  A3707 ( 1.0A)
1.22A 5a5zC-5w6lA:
undetectable
5a5zC-5w6lA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5NZY_A_CE3A1102_1
(DNA CROSS-LINK
REPAIR 1A PROTEIN)
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus)
4 / 7 PHE A3696
ARG A3629
ILE A3632
GLY A3628
PHE  A3696 ( 1.3A)
ARG  A3629 ( 0.6A)
ILE  A3632 ( 0.7A)
GLY  A3628 ( 0.0A)
0.99A 5nzyA-5w6lA:
undetectable
5nzyA-5w6lA:
14.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6GIQ_I_PCFI101_0
(CYTOCHROME B-C1
COMPLEX SUBUNIT 1,
MITOCHONDRIAL
CYTOCHROME B-C1
COMPLEX SUBUNIT 9
CYTOCHROME B-C1
COMPLEX SUBUNIT
RIESKE,
MITOCHONDRIAL)
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus)
5 / 9 ASP A3935
SER A3934
GLY A3847
SER A3851
ILE A3848
ASP  A3935 ( 0.6A)
SER  A3934 ( 0.0A)
GLY  A3847 ( 0.0A)
SER  A3851 ( 0.0A)
ILE  A3848 ( 0.7A)
1.38A 6giqA-5w6lA:
1.0
6giqE-5w6lA:
undetectable
6giqI-5w6lA:
undetectable
6giqA-5w6lA:
undetectable
6giqE-5w6lA:
undetectable
6giqI-5w6lA:
undetectable