SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '5y9f'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3QXV_A_MTXA2000_1
(ANTI-METHOTREXATE
CDR1-4 GRAFT VHH)		 5y9f HEAVY CHAIN OF FAB
FRAGMENT OF ANTIBODY
28F10
(Mus
musculus) 		6 / 12 VAL L   2
ALA L  24
MET L  34
ARG L  72
ASN L  74
TYR L 112
 None
 0.93A 3qxvA-5y9fL:
20.1		 3qxvA-5y9fL:
57.94
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3QXV_C_MTXC2000_1
(ANTI-METHOTREXATE
CDR1-4 GRAFT VHH)		 5y9f HEAVY CHAIN OF FAB
FRAGMENT OF ANTIBODY
28F10
(Mus
musculus) 		5 / 11 VAL L   2
ALA L  24
MET L  34
ARG L  72
ASN L  74
 None
 0.74A 3qxvC-5y9fL:
20.3		 3qxvC-5y9fL:
57.94
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3QXV_D_MTXD2000_1
(ANTI-METHOTREXATE
CDR1-4 GRAFT VHH)		 5y9f HEAVY CHAIN OF FAB
FRAGMENT OF ANTIBODY
28F10
(Mus
musculus) 		5 / 12 VAL L   2
ALA L  24
MET L  34
ARG L  72
TYR L 112
 None
 0.96A 3qxvD-5y9fL:
20.0		 3qxvD-5y9fL:
57.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ECM_D_LEUD602_0
(JASMONIC ACID-AMIDO
SYNTHETASE JAR1)		 5y9f HEAVY CHAIN OF FAB
FRAGMENT OF ANTIBODY
28F10
(Mus
musculus) 		4 / 7 ALA L  92
THR L  91
VAL L 119
GLU L  89
 None
 0.74A 5ecmD-5y9fL:
undetectable		 5ecmD-5y9fL:
18.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ECO_D_LEUD602_0
(JASMONIC ACID-AMIDO
SYNTHETASE JAR1)		 5y9f HEAVY CHAIN OF FAB
FRAGMENT OF ANTIBODY
28F10
(Mus
musculus) 		4 / 7 ALA L  92
THR L  91
VAL L 119
GLU L  89
 None
 0.82A 5ecoD-5y9fL:
undetectable		 5ecoD-5y9fL:
18.04