SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '5ybb'
List of Similar Pattern of Amino Acids| DrReposER ID / Desc. | Hit PDBID |
Hit Macromolecule |
Res. Matches |
Interface | HETATM | RMSD | Dali Z-score |
Seq. Identity (%) |
View | Dock | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1GMK_D_DVAD8_0 (GRAMICIDIN A) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 3 / 3 | TRP A 414VAL A 352TRP A 417 | None | 0.94A | 1gmkC-5ybbA:undetectable1gmkD-5ybbA:undetectable | 1gmkC-5ybbA:4.081gmkD-5ybbA:4.08 | |||
| 1LH6_A_NIOA155_1 (LEGHEMOGLOBIN A(NICOTINATE MET)) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 4 / 7 | PHE A 373PHE A 347VAL A 276HIS A 308 | None | 0.99A | 1lh6A-5ybbA:undetectable | 1lh6A-5ybbA:15.19 | |||
| 1UKB_A_BEZA1301_0 (2-HYDROXY-6-OXO-7-METHYLOCTA-2,4-DIENOATE HYDROLASE) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 4 / 6 | LEU A 87PHE A 90ALA A 89LEU A 129 | None | 0.79A | 1ukbA-5ybbA:undetectable | 1ukbA-5ybbA:18.86 | |||
| 1Y0X_X_T44X500_2 (THYROID HORMONERECEPTOR BETA-1) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 4 / 5 | ILE A 68SER A 113ARG A 100LEU A 102 | None | 1.01A | 1y0xX-5ybbA:undetectable | 1y0xX-5ybbA:18.71 | |||
| 1ZVL_B_H4BB920_1 (NITRIC-OXIDESYNTHASE, BRAIN) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 4 / 6 | TRP A 39GLU A 35ARG A 100VAL A 122 | None | 1.41A | 1zvlA-5ybbA:undetectable1zvlB-5ybbA:undetectable | 1zvlA-5ybbA:20.491zvlB-5ybbA:20.49 | |||
| 2D55_C_DVAC8_0 (ACTINOMYCIN D) |
5ybb | RESTRICTIONENDONUCLEASE SSUBUNITS (Caldanaerobactersubterraneus) | 3 / 3 | PRO D 143THR D 81PRO D 83 | None | 0.48A | 2d55C-5ybbD:undetectable | 2d55C-5ybbD:3.51 | |||
| 2F8D_A_BEZA1001_0 (HTH-TYPETRANSCRIPTIONALREGULATOR BENM) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 4 / 6 | VAL A 153ARG A 7LEU A 10PHE A 148 | None | 1.35A | 2f8dA-5ybbA:undetectable | 2f8dA-5ybbA:18.11 | |||
| 2FB2_A_SAMA501_0 (MOLYBDENUM COFACTORBIOSYNTHESIS PROTEINA) |
5ybb | RESTRICTIONENDONUCLEASE SSUBUNITS (Caldanaerobactersubterraneus) | 4 / 8 | TYR D 39CYH D 100THR D 80THR D 81 | None | 1.01A | 2fb2A-5ybbD:undetectable | 2fb2A-5ybbD:21.27 | |||
| 2HRC_A_CHDA702_0 (FERROCHELATASE) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 4 / 7 | MET A 21LEU A 41VAL A 153TRP A 15 | None | 1.30A | 2hrcA-5ybbA:undetectable | 2hrcA-5ybbA:21.86 | |||
| 2OKC_A_SAMA500_0 (TYPE I RESTRICTIONENZYME STYSJI MPROTEIN) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 5 / 12 | ALA A 197GLY A 199ASN A 279PRO A 281PHE A 305 | SAM A 601 (-3.0A)SAM A 601 (-3.3A)SAM A 601 (-3.7A)SAM A 601 ( 4.5A)SAM A 601 (-4.7A) | 0.47A | 2okcA-5ybbA:34.2 | 2okcA-5ybbA:30.13 | |||
| 2OKC_B_SAMB500_0 (TYPE I RESTRICTIONENZYME STYSJI MPROTEIN) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 5 / 12 | ALA A 197GLY A 199ASN A 279PRO A 281PHE A 305 | SAM A 601 (-3.0A)SAM A 601 (-3.3A)SAM A 601 (-3.7A)SAM A 601 ( 4.5A)SAM A 601 (-4.7A) | 0.45A | 2okcB-5ybbA:35.5 | 2okcB-5ybbA:30.13 | |||
| 2VCD_A_RAPA138_1 (OUTER MEMBRANEPROTEIN MIP) |
5ybb | RESTRICTIONENDONUCLEASE SSUBUNITS (Caldanaerobactersubterraneus) | 5 / 11 | PHE D 252ASP D 251GLN D 267ILE D 295VAL D 279 | None | 1.23A | 2vcdA-5ybbD:undetectable | 2vcdA-5ybbD:17.04 | |||
| 2Y6R_B_CTCB1385_0 (TETX2 PROTEIN) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 4 / 8 | ARG A 175GLY A 169PRO A 238GLY A 242 | SAM A 601 ( 4.2A)NoneSAM A 601 ( 4.8A)None | 0.90A | 2y6rB-5ybbA:2.5 | 2y6rB-5ybbA:22.98 | |||
| 2ZT7_A_GLYA1300_0 (GLYCYL-TRNASYNTHETASE) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 4 / 7 | GLU A 462ARG A 457GLU A 386SER A 354 | None | 1.17A | 2zt7A-5ybbA:undetectable | 2zt7A-5ybbA:22.36 | |||
| 2ZW9_A_SAMA801_1 (LEUCINE CARBOXYLMETHYLTRANSFERASE 2) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 4 / 8 | THR A 359LEU A 389GLU A 327SER A 354 | None | 0.92A | 2zw9A-5ybbA:undetectable | 2zw9A-5ybbA:21.23 | |||
| 3BJW_C_SVRC505_2 (PHOSPHOLIPASE A2) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 4 / 5 | VAL A 181VAL A 182GLN A 188PHE A 373 | None | 1.15A | 3bjwH-5ybbA:undetectable | 3bjwH-5ybbA:10.42 | |||
| 3BJW_C_SVRC507_2 (PHOSPHOLIPASE A2) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 4 / 6 | VAL A 181VAL A 182GLN A 188PHE A 373 | None | 1.16A | 3bjwF-5ybbA:undetectable | 3bjwF-5ybbA:10.42 | |||
| 3BJW_G_SVRG506_2 (PHOSPHOLIPASE A2) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 4 / 5 | VAL A 181VAL A 182GLN A 188PHE A 373 | None | 1.24A | 3bjwB-5ybbA:undetectable | 3bjwB-5ybbA:10.42 | |||
| 3DL9_B_V2HB602_0 (CYTOCHROME P450 2R1) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 5 / 12 | THR A 173PHE A 407VAL A 353ALA A 369THR A 351 | SAM A 601 (-3.2A)NoneNoneNoneNone | 1.26A | 3dl9B-5ybbA:undetectable | 3dl9B-5ybbA:22.11 | |||
| 3K13_A_THHA642_1 (5-METHYLTETRAHYDROFOLATE-HOMOCYSTEINEMETHYLTRANSFERASE) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNITRESTRICTIONENDONUCLEASE SSUBUNITS (Caldanaerobactersubterraneus;Caldanaerobactersubterraneus) | 3 / 3 | ASN D 287ASP D 254ARG A 375 | None | 0.83A | 3k13A-5ybbD:undetectable | 3k13A-5ybbD:22.84 | |||
| 3LTW_A_HLZA300_1 (ARYLAMINEN-ACETYLTRANSFERASENAT) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 4 / 6 | TYR A 363VAL A 177THR A 173PHE A 282 | NoneNoneSAM A 601 (-3.2A)None | 1.21A | 3ltwA-5ybbA:undetectable | 3ltwA-5ybbA:20.71 | |||
| 4BKJ_B_STIB1000_2 (EPITHELIAL DISCOIDINDOMAIN-CONTAININGRECEPTOR 1) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 4 / 5 | LEU A 43TYR A 33MET A 21ARG A 112 | None | 1.19A | 4bkjB-5ybbA:undetectable | 4bkjB-5ybbA:20.36 | |||
| 4C66_A_H4CA1168_0 (BROMODOMAIN-CONTAINING PROTEIN 4) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 5 / 9 | PRO A 295GLN A 297LEU A 304LEU A 262ILE A 266 | NoneNoneNoneSAM A 601 ( 4.2A)None | 1.40A | 4c66A-5ybbA:undetectable | 4c66A-5ybbA:11.59 | |||
| 4KR3_A_GLYA701_0 (GLYCINE--TRNA LIGASE) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 4 / 6 | GLU A 462ARG A 457GLU A 386SER A 354 | None | 1.25A | 4kr3A-5ybbA:undetectable | 4kr3A-5ybbA:20.42 | |||
| 4L7I_B_SAMB501_0 (S-ADENOSYLMETHIONINESYNTHASE) |
5ybb | RESTRICTIONENDONUCLEASE SSUBUNITS (Caldanaerobactersubterraneus) | 4 / 8 | ASN D 110ARG D 111LEU D 119ILE D 155 | None | 1.08A | 4l7iA-5ybbD:undetectable | 4l7iA-5ybbD:22.69 | |||
| 4Z4D_A_IPHA902_0 (PROTEIN ARGONAUTE-2) |
5ybb | RESTRICTIONENDONUCLEASE SSUBUNITS (Caldanaerobactersubterraneus) | 4 / 6 | CYH D 100ILE D 99GLN D 98ILE D 52 | None | 1.19A | 4z4dA-5ybbD:undetectable | 4z4dA-5ybbD:19.11 | |||
| 5FA8_A_SAMA301_1 (RIBOSOMAL PROTEINL11METHYLTRANSFERASE,PUTATIVE) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 3 / 3 | THR A 173ASP A 195GLU A 233 | SAM A 601 (-3.2A)SAM A 601 (-3.5A)SAM A 601 (-2.7A) | 0.74A | 5fa8A-5ybbA:10.8 | 5fa8A-5ybbA:15.58 | |||
| 5JWA_A_ACTA612_0 (NADH DEHYDROGENASE,PUTATIVE) |
5ybb | RESTRICTIONENDONUCLEASE SSUBUNITS (Caldanaerobactersubterraneus) | 3 / 3 | LYS D 51ASP D 46ARG D 124 | None | 1.02A | 5jwaA-5ybbD:undetectable5jwaH-5ybbD:undetectable | 5jwaA-5ybbD:21.025jwaH-5ybbD:21.02 | |||
| 5TL8_A_X2NA502_2 (PROTEIN CYP51) |
5ybb | RESTRICTIONENDONUCLEASE SSUBUNITS (Caldanaerobactersubterraneus) | 4 / 6 | PRO D 257PRO D 244LEU D 243PHE D 245 | None | 1.05A | 5tl8A-5ybbD:undetectable | 5tl8A-5ybbD:21.38 | |||
| 5TUD_D_ERMD1201_1 (5-HYDROXYTRYPTAMINERECEPTOR 2B,SOLUBLECYTOCHROME B562CHIMERA) |
5ybb | RESTRICTIONENDONUCLEASE SSUBUNITS (Caldanaerobactersubterraneus) | 5 / 12 | SER D 47VAL D 177ALA D 89VAL D 167LEU D 390 | None | 1.24A | 5tudD-5ybbD:undetectable | 5tudD-5ybbD:22.51 | |||
| 5YBB_A_SAMA601_0 (TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 12 / 12 | ALA A 197GLY A 199THR A 200CYH A 201GLY A 202LYS A 234LYS A 235PRO A 238THR A 261LEU A 262ASN A 279PHE A 305 | SAM A 601 (-3.0A)SAM A 601 (-3.3A)SAM A 601 (-4.4A)SAM A 601 (-3.2A)SAM A 601 (-3.0A)SAM A 601 (-4.7A)NoneSAM A 601 ( 4.8A)SAM A 601 (-3.8A)SAM A 601 ( 4.2A)SAM A 601 (-3.7A)SAM A 601 (-4.7A) | 0.10A | 5ybbA-5ybbA:61.7 | 5ybbA-5ybbA:100.00 | |||
| 5YBB_A_SAMA601_1 (TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 5 / 5 | PHE A 171THR A 173ASP A 195GLU A 233ASN A 260 | NoneSAM A 601 (-3.2A)SAM A 601 (-3.5A)SAM A 601 (-2.7A)SAM A 601 (-2.9A) | 0.00A | 5ybbA-5ybbA:61.7 | 5ybbA-5ybbA:100.00 | |||
| 5YBB_B_SAMB601_0 (TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 5 / 12 | ASP A 195LYS A 235ASN A 279PRO A 281PHE A 305 | SAM A 601 (-3.5A)NoneSAM A 601 (-3.7A)SAM A 601 ( 4.5A)SAM A 601 (-4.7A) | 0.97A | 5ybbB-5ybbA:59.0 | 5ybbB-5ybbA:100.00 | |||
| 5YBB_B_SAMB601_0 (TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 11 / 12 | THR A 173ARG A 175ASP A 195THR A 200CYH A 201LYS A 234PRO A 238LEU A 262ASN A 279PRO A 281PHE A 305 | SAM A 601 (-3.2A)SAM A 601 ( 4.2A)SAM A 601 (-3.5A)SAM A 601 (-4.4A)SAM A 601 (-3.2A)SAM A 601 (-4.7A)SAM A 601 ( 4.8A)SAM A 601 ( 4.2A)SAM A 601 (-3.7A)SAM A 601 ( 4.5A)SAM A 601 (-4.7A) | 0.12A | 5ybbB-5ybbA:59.0 | 5ybbB-5ybbA:100.00 | |||
| 5YBB_B_SAMB601_1 (TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT) |
5ybb | TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT (Caldanaerobactersubterraneus) | 7 / 7 | PHE A 171ALA A 197GLY A 199GLY A 202GLU A 233ASN A 260THR A 261 | NoneSAM A 601 (-3.0A)SAM A 601 (-3.3A)SAM A 601 (-3.0A)SAM A 601 (-2.7A)SAM A 601 (-2.9A)SAM A 601 (-3.8A) | 0.21A | 5ybbB-5ybbA:59.0 | 5ybbB-5ybbA:100.00 |