SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '6bgd'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1EKJ_E_ACTE3005_0
(BETA-CARBONIC
ANHYDRASE)		 6bgd GLUCOSE/GALACTOSE-BI
NDING LIPOPROTEIN
(Treponema
pallidum) 		4 / 7 ASP A  91
GLY A  51
GLY A  52
TYR A 194
 EDO  A 401 (-3.8A)
EDO  A 401 ( 3.3A)
EDO  A 401 ( 4.8A)
EDO  A 401 (-3.7A)
 0.87A 1ekjE-6bgdA:
undetectable
1ekjF-6bgdA:
undetectable		 1ekjE-6bgdA:
undetectable
1ekjF-6bgdA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1NX9_B_AICB5002_1
(ALPHA-AMINO ACID
ESTER HYDROLASE)		 6bgd GLUCOSE/GALACTOSE-BI
NDING LIPOPROTEIN
(Treponema
pallidum) 		4 / 8 ARG A  20
TYR A 318
GLN A 215
HIS A  89
 None
None
EDO  A 410 ( 4.5A)
None
 1.26A 1nx9B-6bgdA:
3.6		 1nx9B-6bgdA:
9.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2IGT_A_SAMA1001_1
(SAM DEPENDENT
METHYLTRANSFERASE)		 6bgd GLUCOSE/GALACTOSE-BI
NDING LIPOPROTEIN
(Treponema
pallidum) 		3 / 3 ASP A 357
ASP A 354
ASP A 332
 None
EDO  A 403 (-2.4A)
None
 0.65A 2igtA-6bgdA:
undetectable		 2igtA-6bgdA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4A99_D_MIYD391_1
(TETX2 PROTEIN)		 6bgd GLUCOSE/GALACTOSE-BI
NDING LIPOPROTEIN
(Treponema
pallidum) 		5 / 11 GLN A 220
ARG A  20
ASN A 362
GLY A  45
ASN A  90
 EDO  A 408 ( 4.8A)
None
EDO  A 410 ( 4.0A)
EDO  A 408 (-2.7A)
None
 1.48A 4a99D-6bgdA:
undetectable		 4a99D-6bgdA:
12.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4I13_A_FOLA201_1
(DIHYDROFOLATE
REDUCTASE)		 6bgd GLUCOSE/GALACTOSE-BI
NDING LIPOPROTEIN
(Treponema
pallidum) 		3 / 3 ASP A 173
ARG A 285
THR A 212
 None
 0.84A 4i13A-6bgdA:
undetectable		 4i13A-6bgdA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4K7A_A_MXDA1002_1
(ANDROGEN RECEPTOR)		 6bgd GLUCOSE/GALACTOSE-BI
NDING LIPOPROTEIN
(Treponema
pallidum) 		3 / 3 GLU A  97
TRP A 106
LYS A  49
 None
 0.92A 4k7aA-6bgdA:
undetectable		 4k7aA-6bgdA:
14.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4P3R_A_FOLA201_1
(DIHYDROFOLATE
REDUCTASE)		 6bgd GLUCOSE/GALACTOSE-BI
NDING LIPOPROTEIN
(Treponema
pallidum) 		3 / 3 ASP A 173
ARG A 285
THR A 212
 None
 0.85A 4p3rA-6bgdA:
undetectable		 4p3rA-6bgdA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5IMS_B_ACTB713_0
(ACETOLACTATE
SYNTHASE CATALYTIC
SUBUNIT,
MITOCHONDRIAL)		 6bgd GLUCOSE/GALACTOSE-BI
NDING LIPOPROTEIN
(Treponema
pallidum) 		3 / 3 GLY A 104
GLN A 119
LYS A 116
 None
 0.87A 5imsB-6bgdA:
2.8		 5imsB-6bgdA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5L2T_A_6ZZA900_2
(CYCLIN-DEPENDENT
KINASE 6)		 6bgd GLUCOSE/GALACTOSE-BI
NDING LIPOPROTEIN
(Treponema
pallidum) 		3 / 3 LYS A 349
GLN A 341
ASN A 308
 None
 1.06A 5l2tA-6bgdA:
undetectable		 5l2tA-6bgdA:
15.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5OJ0_A_9WTA801_0
(PENICILLIN-BINDING
PROTEIN 2X)		 6bgd GLUCOSE/GALACTOSE-BI
NDING LIPOPROTEIN
(Treponema
pallidum) 		5 / 12 TRP A 280
SER A 277
ASN A 279
GLY A 211
THR A 212
 None
 1.05A 5oj0A-6bgdA:
undetectable		 5oj0A-6bgdA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6HD4_B_STIB602_1
(TYROSINE-PROTEIN
KINASE ABL1)		 6bgd GLUCOSE/GALACTOSE-BI
NDING LIPOPROTEIN
(Treponema
pallidum) 		4 / 6 LEU A 209
VAL A 130
MET A 175
GLY A 178
 None
 1.02A 6hd4B-6bgdA:
undetectable		 6hd4B-6bgdA:
20.00