SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '6gkv'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2FK8_A_SAMA302_1
(METHOXY MYCOLIC ACID
SYNTHASE 4)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
3 / 3 SER A  99
THR A 160
GLN A 165
SAH  A 501 (-2.4A)
SAH  A 501 ( 4.8A)
SAH  A 501 (-2.7A)
0.38A 2fk8A-6gkvA:
26.1
2fk8A-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2NXE_B_SAMB303_0
(RIBOSOMAL PROTEIN
L11
METHYLTRANSFERASE)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
5 / 12 ASP A 135
LEU A 136
GLY A 137
GLY A 139
LEU A 143
None
None
SAH  A 501 (-3.5A)
SAH  A 501 (-3.1A)
None
0.84A 2nxeB-6gkvA:
11.4
2nxeB-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2NXE_B_SAMB303_0
(RIBOSOMAL PROTEIN
L11
METHYLTRANSFERASE)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
5 / 12 ASP A 135
LEU A 136
GLY A 137
GLY A 139
LEU A 205
None
None
SAH  A 501 (-3.5A)
SAH  A 501 (-3.1A)
SAH  A 501 (-4.3A)
0.75A 2nxeB-6gkvA:
11.4
2nxeB-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2NXE_B_SAMB303_0
(RIBOSOMAL PROTEIN
L11
METHYLTRANSFERASE)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
5 / 12 GLY A  98
LEU A 136
GLY A 137
GLY A 139
LEU A 205
SAH  A 501 (-3.9A)
None
SAH  A 501 (-3.5A)
SAH  A 501 (-3.1A)
SAH  A 501 (-4.3A)
0.87A 2nxeB-6gkvA:
11.4
2nxeB-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2OXT_B_SAMB300_0
(NUCLEOSIDE-2'-O-METH
YLTRANSFERASE)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
5 / 12 GLY A 137
GLY A 139
GLY A 141
THR A 160
ILE A 188
SAH  A 501 (-3.5A)
SAH  A 501 (-3.1A)
None
SAH  A 501 ( 4.8A)
SAH  A 501 (-3.9A)
0.73A 2oxtB-6gkvA:
7.6
2oxtB-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3D9L_A_ACTA501_0
(CTD-PEPTIDE
RNA-BINDING PROTEIN
16)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
4 / 5 PRO A 265
ILE A 263
TYR A 241
TYR A 243
None
1.35A 3d9lA-6gkvA:
undetectable
3d9lY-6gkvA:
undetectable
3d9lA-6gkvA:
undetectable
3d9lY-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ELZ_A_CHDA150_0
(ILEAL BILE
ACID-BINDING PROTEIN)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
5 / 12 TRP A 329
MET A 311
VAL A 323
LEU A  88
ILE A  90
None
1.37A 3elzA-6gkvA:
undetectable
3elzA-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3IHT_A_SAMA200_0
(S-ADENOSYL-L-METHION
INE METHYL
TRANSFERASE)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
6 / 12 GLY A 137
GLY A 139
GLY A 141
ASP A 187
ILE A 188
LEU A 205
SAH  A 501 (-3.5A)
SAH  A 501 (-3.1A)
None
SAH  A 501 (-4.2A)
SAH  A 501 (-3.9A)
SAH  A 501 (-4.3A)
0.77A 3ihtA-6gkvA:
7.3
3ihtA-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3IV6_A_SAMA301_0
(PUTATIVE
ZN-DEPENDENT ALCOHOL
DEHYDROGENASE)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
5 / 12 GLY A 137
SER A 162
ASP A 187
THR A 189
LEU A 205
SAH  A 501 (-3.5A)
None
SAH  A 501 (-4.2A)
None
SAH  A 501 (-4.3A)
0.62A 3iv6A-6gkvA:
14.1
3iv6A-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3IV6_A_SAMA301_0
(PUTATIVE
ZN-DEPENDENT ALCOHOL
DEHYDROGENASE)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
5 / 12 SER A 162
ASP A 187
ILE A 188
THR A 189
LEU A 205
None
SAH  A 501 (-4.2A)
SAH  A 501 (-3.9A)
None
SAH  A 501 (-4.3A)
0.75A 3iv6A-6gkvA:
14.1
3iv6A-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3PFG_A_SAMA264_0
(N-METHYLTRANSFERASE)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
5 / 12 TYR A  81
GLY A 139
SER A 162
ASP A 187
HIS A 208
SAH  A 501 (-3.6A)
SAH  A 501 (-3.1A)
None
SAH  A 501 (-4.2A)
SAH  A 501 ( 4.6A)
0.97A 3pfgA-6gkvA:
13.3
3pfgA-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4F84_A_SAMA501_0
(GERANYL DIPHOSPHATE
2-C-METHYLTRANSFERAS
E)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
5 / 12 GLY A 137
GLY A 139
VAL A 159
THR A 160
GLN A 165
SAH  A 501 (-3.5A)
SAH  A 501 (-3.1A)
None
SAH  A 501 ( 4.8A)
SAH  A 501 (-2.7A)
0.51A 4f84A-6gkvA:
20.0
4f84A-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4FGZ_B_CQAB302_0
(PHOSPHOETHANOLAMINE
N-METHYLTRANSFERASE)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
4 / 8 GLU A 170
GLU A 167
TYR A 168
GLY A 141
None
0.96A 4fgzA-6gkvA:
23.8
4fgzB-6gkvA:
23.8
4fgzA-6gkvA:
undetectable
4fgzB-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4IV0_B_SAMB302_0
(PHOSPHOETHANOLAMINE
N-METHYLTRANSFERASE,
PUTATIVE)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
5 / 12 GLY A 137
GLY A 139
ASP A 187
ILE A 188
HIS A 208
SAH  A 501 (-3.5A)
SAH  A 501 (-3.1A)
SAH  A 501 (-4.2A)
SAH  A 501 (-3.9A)
SAH  A 501 ( 4.6A)
0.70A 4iv0B-6gkvA:
22.5
4iv0B-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4IV0_B_SAMB302_0
(PHOSPHOETHANOLAMINE
N-METHYLTRANSFERASE,
PUTATIVE)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
5 / 12 TYR A  81
GLY A 137
GLY A 139
ASP A 187
HIS A 208
SAH  A 501 (-3.6A)
SAH  A 501 (-3.5A)
SAH  A 501 (-3.1A)
SAH  A 501 (-4.2A)
SAH  A 501 ( 4.6A)
0.89A 4iv0B-6gkvA:
22.5
4iv0B-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4KRH_A_SAMA900_0
(PHOSPHOETHANOLAMINE
N-METHYLTRANSFERASE
2)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
5 / 12 TYR A  81
GLY A 137
GLY A 139
ASP A 187
HIS A 208
SAH  A 501 (-3.6A)
SAH  A 501 (-3.5A)
SAH  A 501 (-3.1A)
SAH  A 501 (-4.2A)
SAH  A 501 ( 4.6A)
0.74A 4krhA-6gkvA:
23.4
4krhA-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4KRH_A_SAMA900_0
(PHOSPHOETHANOLAMINE
N-METHYLTRANSFERASE
2)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
5 / 12 TYR A  81
GLY A 137
GLY A 139
SER A 162
ASP A 187
SAH  A 501 (-3.6A)
SAH  A 501 (-3.5A)
SAH  A 501 (-3.1A)
None
SAH  A 501 (-4.2A)
0.94A 4krhA-6gkvA:
23.4
4krhA-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4L3G_F_ACTF401_0
(METHYLAMINE
DEHYDROGENASE HEAVY
CHAIN)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
3 / 3 ARG A  36
LEU A  33
GLU A  37
None
0.76A 4l3gF-6gkvA:
undetectable
4l3gF-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4N48_A_SAMA601_0
(CAP-SPECIFIC MRNA
(NUCLEOSIDE-2'-O-)-M
ETHYLTRANSFERASE 1)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
5 / 12 GLY A 139
GLY A 141
THR A 160
ILE A 188
THR A 189
SAH  A 501 (-3.1A)
None
SAH  A 501 ( 4.8A)
SAH  A 501 (-3.9A)
None
0.78A 4n48A-6gkvA:
7.4
4n48A-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4N49_A_SAMA601_0
(CAP-SPECIFIC MRNA
(NUCLEOSIDE-2'-O-)-M
ETHYLTRANSFERASE 1)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
5 / 12 GLY A 139
GLY A 141
THR A 160
ILE A 188
THR A 189
SAH  A 501 (-3.1A)
None
SAH  A 501 ( 4.8A)
SAH  A 501 (-3.9A)
None
0.81A 4n49A-6gkvA:
7.1
4n49A-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4PGF_A_ADNA502_1
(ADENOSYLHOMOCYSTEINA
SE)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
5 / 12 LEU A  80
LEU A  88
ASN A  92
GLY A  98
PHE A 257
None
None
None
SAH  A 501 (-3.9A)
F2W  A 502 (-4.5A)
1.11A 4pgfA-6gkvA:
3.2
4pgfA-6gkvA:
12.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ZZB_E_ACTE403_0
(PROTON-GATED ION
CHANNEL)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
3 / 3 ARG A 176
TYR A 168
GLU A 172
None
0.67A 4zzbE-6gkvA:
undetectable
4zzbE-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5A06_D_SORD1341_0
(ALDOSE-ALDOSE
OXIDOREDUCTASE)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
4 / 6 CYH A 235
GLU A 347
GLY A 345
GLY A 287
None
1.01A 5a06D-6gkvA:
3.1
5a06D-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5KOC_A_SAMA401_0
(PAVINE
N-METHYLTRANSFERASE)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
7 / 12 GLY A 139
ASN A 161
GLN A 165
ASP A 187
THR A 189
LEU A 205
HIS A 208
SAH  A 501 (-3.1A)
SAH  A 501 (-3.6A)
SAH  A 501 (-2.7A)
SAH  A 501 (-4.2A)
None
SAH  A 501 (-4.3A)
SAH  A 501 ( 4.6A)
0.66A 5kocA-6gkvA:
48.5
5kocA-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5KOC_B_SAMB401_0
(PAVINE
N-METHYLTRANSFERASE)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
8 / 12 SER A  99
GLY A 137
GLY A 139
THR A 160
ASN A 161
GLN A 165
LEU A 205
HIS A 208
SAH  A 501 (-2.4A)
SAH  A 501 (-3.5A)
SAH  A 501 (-3.1A)
SAH  A 501 ( 4.8A)
SAH  A 501 (-3.6A)
SAH  A 501 (-2.7A)
SAH  A 501 (-4.3A)
SAH  A 501 ( 4.6A)
0.63A 5kocB-6gkvA:
48.1
5kocB-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5KPC_A_SAMA401_1
(PAVINE
N-METHYLTRANSFERASE)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
4 / 5 SER A  99
ASN A 161
GLN A 165
ASP A 187
SAH  A 501 (-2.4A)
SAH  A 501 (-3.6A)
SAH  A 501 (-2.7A)
SAH  A 501 (-4.2A)
0.87A 5kpcA-6gkvA:
47.8
5kpcA-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5KPC_B_SAMB401_0
(PAVINE
N-METHYLTRANSFERASE)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
9 / 12 LYS A  97
SER A  99
GLY A 137
GLY A 139
ASN A 161
SER A 162
GLN A 165
ASP A 187
THR A 189
SAH  A 501 ( 4.5A)
SAH  A 501 (-2.4A)
SAH  A 501 (-3.5A)
SAH  A 501 (-3.1A)
SAH  A 501 (-3.6A)
None
SAH  A 501 (-2.7A)
SAH  A 501 (-4.2A)
None
0.81A 5kpcB-6gkvA:
45.8
5kpcB-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5WY0_A_SAMA800_0
(SMALL RNA
2'-O-METHYLTRANSFERA
SE)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
5 / 12 GLY A 137
GLY A 139
ILE A 203
LEU A 205
HIS A 208
SAH  A 501 (-3.5A)
SAH  A 501 (-3.1A)
SAH  A 501 (-4.2A)
SAH  A 501 (-4.3A)
SAH  A 501 ( 4.6A)
0.51A 5wy0A-6gkvA:
11.1
5wy0A-6gkvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6A7J_A_TESA502_0
(CYTOCHROME P450)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
4 / 7 LEU A  88
LEU A  96
ALA A 142
THR A 160
None
None
SAH  A 501 ( 4.7A)
SAH  A 501 ( 4.8A)
0.79A 6a7jA-6gkvA:
undetectable
6a7jA-6gkvA:
23.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6HWD_B_BO2B201_0
(PROTEASOME SUBUNIT
BETA TYPE-1
PROTEASOME SUBUNIT
BETA TYPE-2)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
5 / 12 THR A 144
ALA A 148
GLY A 137
ALA A 158
THR A 160
None
None
SAH  A 501 (-3.5A)
None
SAH  A 501 ( 4.8A)
1.24A 6hwdV-6gkvA:
undetectable
6hwdb-6gkvA:
undetectable
6hwdV-6gkvA:
23.53
6hwdb-6gkvA:
20.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6HWD_N_BO2N201_0
(PROTEASOME SUBUNIT
BETA TYPE-1
PROTEASOME SUBUNIT
BETA TYPE-2)
6gkv COCLAURINE
N-METHYLTRANSFERASE

(Coptis
japonica)
5 / 12 THR A 144
ALA A 148
GLY A 137
ALA A 158
THR A 160
None
None
SAH  A 501 (-3.5A)
None
SAH  A 501 ( 4.8A)
1.24A 6hwdH-6gkvA:
undetectable
6hwdN-6gkvA:
undetectable
6hwdH-6gkvA:
23.53
6hwdN-6gkvA:
20.48